It was reported that the royal couple arrived on board an Air Peace flight.
The British Royal couple was received by the Chairman of the airline, Dr Allen Onyema, top-tier military officials and other key government functionaries.
They were also received with a cultural display by a dance troupe at the Presidential Wing of the Murtala Muhammed Airport Terminal II, Ikeja.
Harry and Meghan will be meeting Governor Babajide Sanwo-Olu at the Lagos House in Marina.
Meghan, 42, wore a white button down shirt and tied an aso oke wrapper.
It will be recalled that the Duke and Duchess arrived in Nigeria on Friday, as part of their promotion of the Invictus Games, the sporting event Harry founded for wounded military veterans.